Publications of L. Ryan Baugh    :chronological  alphabetical  combined  bibtex listing:

search PubMed.

Papers Published

  1. Falsztyn, IB; Taylor, SM; Baugh, LR, Developmental and conditional regulation of DAF-2/INSR ubiquitination in Caenorhabditis elegans., in Cold Spring Harbor Laboratory (May, 2024) [doi] .
  2. Shaul, NC; Jordan, JM; Falsztyn, IB; Ryan Baugh, L, Insulin/IGF-dependent Wnt signaling promotes formation of germline tumors and other developmental abnormalities following early-life starvation in Caenorhabditis elegans., Genetics, vol. 223 no. 2 (February, 2023), pp. iyac173 [doi]  [abs].
  3. Jordan, JM; Webster, AK; Chen, J; Chitrakar, R; Ryan Baugh, L, Early-life starvation alters lipid metabolism in adults to cause developmental pathology in Caenorhabditis elegans., Genetics, vol. 223 no. 2 (February, 2023), pp. iyac172 [doi]  [abs].
  4. Webster, AK; Chitrakar, R; Powell, M; Chen, J; Fisher, K; Tanny, RE; Stevens, L; Evans, K; Wei, A; Antoshechkin, I; Andersen, EC; Baugh, LR, Using population selection and sequencing to characterize natural variation of starvation resistance in Caenorhabditis elegans., eLife, vol. 11 (June, 2022), pp. e80204 [doi]  [abs].
  5. Chen, J; Tang, LY; Powell, ME; Jordan, JM; Baugh, LR, Genetic analysis of daf-18/PTEN missense mutants for starvation resistance and developmental regulation during Caenorhabditis elegans L1 arrest., G3 (Bethesda, Md.), vol. 12 no. 6 (May, 2022), pp. jkac092 [doi]  [abs].
  6. Stevens, L; Moya, ND; Tanny, RE; Gibson, SB; Tracey, A; Na, H; Chitrakar, R; Dekker, J; Walhout, AJM; Baugh, LR; Andersen, EC, Chromosome-Level Reference Genomes for Two Strains of Caenorhabditis briggsae: An Improved Platform for Comparative Genomics., Genome biology and evolution, vol. 14 no. 4 (April, 2022), pp. evac042 [doi]  [abs].
  7. Mello, DF; Bergemann, CM; Fisher, K; Chitrakar, R; Bijwadia, SR; Wang, Y; Caldwell, A; Baugh, LR; Meyer, JN, Rotenone Modulates Caenorhabditis elegans Immunometabolism and Pathogen Susceptibility., Frontiers in immunology, vol. 13 (January, 2022), pp. 840272 [doi]  [abs].
  8. Burton, NO; Willis, A; Fisher, K; Braukmann, F; Price, J; Stevens, L; Baugh, LR; Reinke, A; Miska, EA, Intergenerational adaptations to stress are evolutionarily conserved, stress-specific, and have deleterious trade-offs., eLife, vol. 10 (October, 2021), pp. e73425 [doi]  [abs].
  9. Burton, NO; Willis, A; Fisher, K; Braukmann, F; Price, J; Stevens, L; Baugh, LR; Reinke, A; Miska, EA, Author response: Intergenerational adaptations to stress are evolutionarily conserved, stress-specific, and have deleterious trade-offs (September, 2021), eLife Sciences Publications, Ltd [doi] .
  10. Fry, AL; Webster, AK; Burnett, J; Chitrakar, R; Baugh, LR; Hubbard, EJA, DAF-18/PTEN inhibits germline zygotic gene activation during primordial germ cell quiescence., PLoS genetics, vol. 17 no. 7 (July, 2021), pp. e1009650 [doi]  [abs].
  11. Lee, D; Zdraljevic, S; Stevens, L; Wang, Y; Tanny, RE; Crombie, TA; Cook, DE; Webster, AK; Chirakar, R; Baugh, LR; Sterken, MG; Braendle, C; Félix, M-A; Rockman, MV; Andersen, EC, Balancing selection maintains hyper-divergent haplotypes in Caenorhabditis elegans., Nature ecology & evolution, vol. 5 no. 6 (June, 2021), pp. 794-807 [doi]  [abs].
  12. Hibshman, JD; Webster, AK; Baugh, LR, Liquid-culture protocols for synchronous starvation, growth, dauer formation, and dietary restriction of Caenorhabditis elegans., STAR protocols, vol. 2 no. 1 (March, 2021), pp. 100276 [doi]  [abs].
  13. Noble, LM; Yuen, J; Stevens, L; Moya, N; Persaud, R; Moscatelli, M; Jackson, JL; Zhang, G; Chitrakar, R; Baugh, LR; Braendle, C; Andersen, EC; Seidel, HS; Rockman, MV, Selfing is the safest sex for Caenorhabditis tropicalis., eLife, vol. 10 (January, 2021), pp. e62587 [doi]  [abs].
  14. Webster, A; Chitrakar, R; Baugh, R, Alternative somatic and germline gene-regulatory strategies during starvation-induced developmental arrest, vol. 41 no. 2 (2021), pp. 111473, Elsevier BV [doi]  [abs].
  15. Baugh, LR; Hu, PJ, Starvation Responses Throughout the Caenorhabditiselegans Life Cycle., Genetics, vol. 216 no. 4 (December, 2020), pp. 837-878 [doi]  [abs].
  16. Baugh, LR; Day, T, Nongenetic inheritance and multigenerational plasticity in the nematode C. elegans., eLife, vol. 9 (August, 2020), pp. e58498 [doi]  [abs].
  17. Lee, D; Zdraljevic, S; Stevens, L; Wang, Y; Tanny, R; Crombie, T; Cook, D; Webster, A; Chirakar, R; Baugh, R; Sterken, M; Braendle, C; Félix, M-A; Rockman, M; Andersen, E, Balancing selection maintains hyper-divergent haplotypes inC. elegans (2020) [doi]  [abs].
  18. Webster, AK; Hung, A; Moore, BT; Guzman, R; Jordan, JM; Kaplan, REW; Hibshman, JD; Tanny, RE; Cook, DE; Andersen, E; Baugh, LR, Population Selection and Sequencing of Caenorhabditis elegans Wild Isolates Identifies a Region on Chromosome III Affecting Starvation Resistance., G3 (Bethesda, Md.), vol. 9 no. 10 (October, 2019), pp. 3477-3488 [doi]  [abs].
  19. Jordan, JM; Hibshman, JD; Webster, AK; Kaplan, REW; Leinroth, A; Guzman, R; Maxwell, CS; Chitrakar, R; Bowman, EA; Fry, AL; Hubbard, EJA; Baugh, LR, Insulin/IGF Signaling and Vitellogenin Provisioning Mediate Intergenerational Adaptation to Nutrient Stress., Current biology : CB, vol. 29 no. 14 (July, 2019), pp. 2380-2388.e5 [doi]  [abs].
  20. Kaplan, REW; Maxwell, CS; Codd, NK; Baugh, LR, Pervasive Positive and Negative Feedback Regulation of Insulin-Like Signaling in Caenorhabditis elegans., Genetics, vol. 211 no. 1 (January, 2019), pp. 349-361 [doi]  [abs].
  21. Burton, NO; Dwivedi, VK; Burkhart, KB; Kaplan, REW; Baugh, LR; Horvitz, HR, Neurohormonal signaling via a sulfotransferase antagonizes insulin-like signaling to regulate a Caenorhabditis elegans stress response., Nature communications, vol. 9 no. 1 (December, 2018), pp. 5152 [doi]  [abs].
  22. Hibshman, JD; Leuthner, TC; Shoben, C; Mello, DF; Sherwood, DR; Meyer, JN; Baugh, LR, Nonselective autophagy reduces mitochondrial content during starvation in Caenorhabditis elegans., American journal of physiology. Cell physiology, vol. 315 no. 6 (December, 2018), pp. C781-C792 [doi]  [abs].
  23. Jordan, JM; Hibshman, JD; Kaplan, REW; Webster, AK; Leinroth, A; Maxwell, CS; Bowman, EA; Hubbard, EJA; Baugh, LR, Intergenerational Effects of Dietary Restriction and Insulin/IGF Signaling on Starvation Resistance and Reproductive Development (October, 2018) .
  24. Kaplan, REW; Webster, AK; Chitrakar, R; Dent, JA; Baugh, LR, Food perception without ingestion leads to metabolic changes and irreversible developmental arrest in C. elegans., BMC biology, vol. 16 no. 1 (October, 2018), pp. 112 [doi]  [abs].
  25. Webster, AK; Jordan, JM; Hibshman, JD; Chitrakar, R; Baugh, LR, Transgenerational Effects of Extended Dauer Diapause on Starvation Survival and Gene Expression Plasticity in Caenorhabditis elegans., Genetics, vol. 210 no. 1 (September, 2018), pp. 263-274 [doi]  [abs].
  26. Hibshman, JD; Hung, A; Baugh, LR, Correction: Maternal Diet and Insulin-Like Signaling Control Intergenerational Plasticity of Progeny Size and Starvation Resistance., PLoS genetics, vol. 14 no. 8 (August, 2018), pp. e1007639 [doi]  [abs].
  27. Webster, A; Jordan, J; Hibshman, J; Chitrakar, R; Ryan Baugh, L, Dauer diapause has transgenerational effects on starvation survival and gene expression plasticity (2018) [doi]  [abs].
  28. Maxwell, C; Kaplan, R; Codd, NK; Baugh, R, Pervasive positive and negative feedback regulation of insulin-like signaling inCaenorhabditis elegans (2018) [doi]  [abs].
  29. Kaplan, R; Webster, A; Chitrakar, R; Dent, J; Ryan Baugh, L, Perception of environmental polypeptides inC. elegansactivates insulin/IGF signaling and alters lipid metabolism (2018) [doi]  [abs].
  30. Hibshman, JD; Doan, AE; Moore, BT; Kaplan, RE; Hung, A; Webster, AK; Bhatt, DP; Chitrakar, R; Hirschey, MD; Baugh, LR, daf-16/FoxO promotes gluconeogenesis and trehalose synthesis during starvation to support survival., Elife, vol. 6 (October, 2017), pp. e30057 [doi]  [abs].
  31. Fradin, H; Kiontke, K; Zegar, C; Gutwein, M; Lucas, J; Kovtun, M; Corcoran, DL; Baugh, LR; Fitch, DHA; Piano, F; Gunsalus, KC, Genome Architecture and Evolution of a Unichromosomal Asexual Nematode., Current biology : CB, vol. 27 no. 19 (October, 2017), pp. 2928-2939.e6 [doi]  [abs].
  32. Burton, NO; Furuta, T; Webster, AK; Kaplan, REW; Baugh, LR; Arur, S; Horvitz, HR, Insulin-like signalling to the maternal germline controls progeny response to osmotic stress., Nature cell biology, vol. 19 no. 3 (March, 2017), pp. 252-257 [doi]  [abs].
  33. O. Burton, N; Dwivedi, V; Burkhart, K; Kaplan, EWR; Baugh, R; Horvitz, R, Neurohormonal signalling controls insulin sensitivity and specificity in C. elegans (2017) [doi]  [abs].
  34. Hibshman, JD; Hung, A; Baugh, LR, Maternal Diet and Insulin-Like Signaling Control Intergenerational Plasticity of Progeny Size and Starvation Resistance., PLoS genetics, vol. 12 no. 10 (October, 2016), pp. e1006396 [doi]  [abs].
  35. Kaplan, REW; Baugh, LR, L1 arrest, daf-16/FoxO and nonautonomous control of post-embryonic development., Worm, vol. 5 no. 2 (April, 2016), pp. e1175196 [doi]  [abs].
  36. Kaplan, RE; Chen, Y; Moore, BT; Jordan, JM; Maxwell, CS; Schindler, AJ; Baugh, LR, dbl-1/TGF-β and daf-12/NHR Signaling Mediate Cell-Nonautonomous Effects of daf-16/FOXO on Starvation-Induced Developmental Arrest, PLoS genetics, vol. 11 no. 12 (December, 2015), pp. e1005731, Public Library of Science [journal.pgen.1005731], [doi]  [abs].
  37. Jobson, MA; Jordan, JM; Sandrof, MA; Hibshman, JD; Lennox, AL; Baugh, LR, Transgenerational Effects of Early Life Starvation on Growth, Reproduction, and Stress Resistance in Caenorhabditis elegans., Genetics, vol. 201 no. 1 (September, 2015), pp. 201-212 [repository], [doi]  [abs].
  38. Chen, Y; Baugh, LR, Ins-4 and daf-28 function redundantly to regulate C. elegans L1 arrest., Developmental biology, vol. 394 no. 2 (October, 2014), pp. 314-326 [repository], [doi]  [abs].
  39. Y Chen, LR Baugh, Ins-4 and daf-28 function redundantly to regulate C. elegans L1 arrest., Developmental Biology (August, 2014) [002], [doi]  [abs].
  40. Schindler, AJ; Baugh, LR; Sherwood, DR, Identification of late larval stage developmental checkpoints in Caenorhabditis elegans regulated by insulin/IGF and steroid hormone signaling pathways., PLoS genetics, vol. 10 no. 6 (June, 2014), pp. e1004426 [repository], [doi]  [abs].
  41. Maxwell, CS; Kruesi, WS; Core, LJ; Kurhanewicz, N; Waters, CT; Lewarch, CL; Antoshechkin, I; Lis, JT; Meyer, BJ; Baugh, LR, Pol II docking and pausing at growth and stress genes in C. elegans., Cell reports, vol. 6 no. 3 (February, 2014), pp. 455-466 [repository], [doi]  [abs].
  42. Schindler, AJ; Baugh, LR; Sherwood, DR, Identification of two novel insulin- and hormone-regulated nutritional checkpoints in C. elegans development, INTEGRATIVE AND COMPARATIVE BIOLOGY, vol. 54 (January, 2014), pp. E185-E185, OXFORD UNIV PRESS INC [Gateway.cgi] .
  43. Baugh, LR, To grow or not to grow: nutritional control of development during Caenorhabditis elegans L1 arrest., Genetics, vol. 194 no. 3 (July, 2013), pp. 539-555 [23824969], [doi]  [abs] [author's comments].
  44. Artyukhin, AB; Yim, JJ; Srinivasan, J; Izrayelit, Y; Bose, N; von Reuss, SH; Jo, Y; Jordan, JM; Baugh, LR; Cheong, M; Sternberg, PW; Avery, L; Schroeder, FC, Succinylated octopamine ascarosides and a new pathway of biogenic amine metabolism in Caenorhabditis elegans., The Journal of biological chemistry, vol. 288 no. 26 (June, 2013), pp. 18778-18783 [repository], [doi]  [abs].
  45. Moore, BT; Jordan, JM; Baugh, LR, WormSizer: high-throughput analysis of nematode size and shape., PloS one, vol. 8 no. 2 (January, 2013), pp. e57142 [23451165], [doi]  [abs].
  46. Maxwell, CS; Antoshechkin, I; Kurhanewicz, N; Belsky, JA; Baugh, LR, Nutritional control of mRNA isoform expression during developmental arrest and recovery in C. elegans., Genome research, vol. 22 no. 10 (October, 2012), pp. 1920-1929 [22539650], [doi]  [abs].
  47. Zaslaver, A; Baugh, LR; Sternberg, PW, Metazoan operons accelerate recovery from growth-arrested states., Cell, vol. 145 no. 6 (June, 2011), pp. 981-992 [repository], [doi]  [abs].
  48. Baugh, LR; Kurhanewicz, N; Sternberg, PW, Sensitive and precise quantification of insulin-like mRNA expression in Caenorhabditis elegans., PloS one, vol. 6 no. 3 (March, 2011), pp. e18086 [21445366], [doi]  [abs].
  49. Baugh, LR, Staging worms for next-generation analysis., Nature methods, vol. 6 no. 10 (October, 2009), pp. 727-728 [html], [doi]  [abs].
  50. Baugh, LR; Demodena, J; Sternberg, PW, RNA Pol II accumulates at promoters of growth genes during developmental arrest., Science (New York, N.Y.), vol. 324 no. 5923 (April, 2009), pp. 92-94 [1169628], [doi]  [abs].
  51. Yanai, I; Baugh, LR; Smith, JJ; Roehrig, C; Shen-Orr, SS; Claggett, JM; Hill, AA; Slonim, DK; Hunter, CP, Pairing of competitive and topologically distinct regulatory modules enhances patterned gene expression., Molecular systems biology, vol. 4 (January, 2008), pp. 163 [doi]  [abs].
  52. Heng, X; Erickson, D; Baugh, LR; Yaqoob, Z; Sternberg, PW; Psaltis, D; Yang, C, Optofluidic microscope: A novel high resolution microscope-on-a-chip system, LEOS Summer Topical Meeting (December, 2006), pp. 15-16 .
  53. Baugh, LR; Hunter, CP, MyoD, modularity, and myogenesis: conservation of regulators and redundancy in C. elegans., Genes & development, vol. 20 no. 24 (December, 2006), pp. 3342-3346 [doi] .
  54. Heng, X; Cui, X; Erickson, D; Baugh, LR; Sternberg, PW; Psaltis, D; Yang, C, A compact optofluidic microscope, Proceedings of SPIE - The International Society for Optical Engineering, vol. 6329 (December, 2006) [doi]  [abs].
  55. Heng, X; Erickson, D; Baugh, LR; Yaqoob, Z; Sternberg, PW; Psaltis, D; Yang, C, Optofluidic microscopy--a method for implementing a high resolution optical microscope on a chip., Lab on a chip, vol. 6 no. 10 (October, 2006), pp. 1274-1276 [doi]  [abs].
  56. Roehrig, CJ; Baugh, LR; Claggett, JM; Shen-Orr, S; Smith, JJ; Yanai, I; Hunter, P, Caution, regulatory network assembly in progress, Developmental Biology, vol. 295 no. 1 (July, 2006), pp. 450-450, Elsevier BV [doi] .
  57. Baugh, LR; Sternberg, PW, DAF-16/FOXO regulates transcription of cki-1/Cip/Kip and repression of lin-4 during C. elegans L1 arrest., Current biology : CB, vol. 16 no. 8 (April, 2006), pp. 780-785 [doi]  [abs].
  58. Heng, X; Erickson, D; Baugh, LR; Yaqoob, Z; Sternberg, PW; Psaltis, D; Yang, C, Optofluidic microscope - A novel microscope-on-a-chip system, Optics InfoBase Conference Papers (January, 2006)  [abs].
  59. Baugh, LR; Hill, AA; Claggett, JM; Hill-Harfe, K; Wen, JC; Slonim, DK; Brown, EL; Hunter, CP, The homeodomain protein PAL-1 specifies a lineage-specific regulatory network in the C. elegans embryo., Development (Cambridge, England), vol. 132 no. 8 (April, 2005), pp. 1843-1854 [15772128], [doi]  [abs].
  60. Baugh, LR; Wen, JC; Hill, AA; Slonim, DK; Brown, EL; Hunter, CP, Synthetic lethal analysis of Caenorhabditis elegans posterior embryonic patterning genes identifies conserved genetic interactions., Genome biology, vol. 6 no. 5 (January, 2005), pp. R45 [15892873], [doi]  [abs].
  61. Baugh, LR; Hill-Harfe, K; Hill, AA; Wen, JC; Slonim, DK; Brown, EL; Hunter, CP, Characterization of the C-elegans embryonic regulatory network specified by PAL-1., DEVELOPMENTAL BIOLOGY, vol. 259 no. 2 (July, 2003), pp. 527-528, ACADEMIC PRESS INC ELSEVIER SCIENCE .
  62. Baugh, LR; Hill, AA; Slonim, DK; Brown, EL; Hunter, CP, Composition and dynamics of the Caenorhabditis elegans early embryonic transcriptome., Development (Cambridge, England), vol. 130 no. 5 (March, 2003), pp. 889-900 [doi]  [abs].
  63. Huet, F; Lu, JT; Myrick, KV; Baugh, LR; Crosby, MA; Gelbart, WM, A deletion-generator compound element allows deletion saturation analysis for genomewide phenotypic annotation., Proceedings of the National Academy of Sciences of the United States of America, vol. 99 no. 15 (July, 2002), pp. 9948-9953 [doi]  [abs].
  64. Harvey, AJ; Speksnijder, G; Baugh, LR; Morris, JA; Ivarie, R, Expression of exogenous protein in the egg white of transgenic chickens., Nature biotechnology, vol. 20 no. 4 (April, 2002), pp. 396-399 [doi]  [abs].
  65. Harvey, AJ; Speksnijder, G; Baugh, LR; Morris, JA; Ivarie, R, Consistent production of transgenic chickens using replication-deficient retroviral vectors and high-throughput screening procedures., Poultry science, vol. 81 no. 2 (February, 2002), pp. 202-212 [doi]  [abs].
  66. Baugh, LR; Hill, AA; Brown, EL; Hunter, CP, Quantitative analysis of mRNA amplification by in vitro transcription., Nucleic acids research, vol. 29 no. 5 (March, 2001), pp. E29 [doi]  [abs].
  67. Zhang, G; Deng, E; Baugh, L; Kushner, SR, Identification and characterization of Escherichia coli DNA helicase II mutants that exhibit increased unwinding efficiency., Journal of bacteriology, vol. 180 no. 2 (January, 1998), pp. 377-387 [doi]  [abs].
  68. Zhang, G; Deng, E; Baugh, LR; Hamilton, CM; Maples, VF; Kushner, SR, Conserved motifs II to VI of DNA helicase II from Escherichia coli are all required for biological activity., Journal of bacteriology, vol. 179 no. 23 (December, 1997), pp. 7544-7550 [doi]  [abs].

Other

  1. L. Ryan Baugh and Sabbi Lall, Cell podcast, Cell (January 30, 2014) [mp3]  [author's comments].