Publications of Oliver Ratmann    :chronological  alphabetical  combined  bibtex listing:

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Papers Published

  1. Ratmann O, Andrieu C, Wiuf C and Richardson S, Reply to Robert et al.: Model criticism informs model choice and model comparison, Proc Natl Acad Sci USA, vol. 107 no. 3 (January, 2010), pp. E6-E7 [doi]  [abs].
  2. Ratmann O, Wiuf C, Pinney JW, From evidence to inference: probing the evolution of protein interaction networks, HFSP Journal, vol. 3 no. 5 (December, 2009), pp. 290-306 [doi]  [abs].
  3. Ratmann O, Andrieu C, Wiuf C and Richardson S, Model criticism based on likelihood-free inference, with an application to protein network evolution, Proc Natl Acad Sci USA, vol. 106 no. 26 (June, 2009), pp. 10576-10581 [doi]  [abs].
  4. Surmeli D, Ratmann O, Mewes HW and Tetko IV, FunCat functional inference with belief propagation and feature integration, Comput Biol Chem, vol. 32 no. 5 (August, 2008), pp. 375-7 [doi]  [abs].
  5. Ratmann O, Jorgensen O, Hinkley T, Stumpf MPH, Richardson S and Wiuf C, Using Likelihood-Free Inference to Compare Evolutionary Dynamics of the Protein Networks of H. pylori and P. falciparum, PLoS Comp Biol, vol. 3 no. 2007 (November, 2007), pp. e230 [doi]  [abs].

Book Chapters

  1. Wiuf C and Ratmann O, Statistical and Evolutionary Analysis of Biological Networks, edited by Stumpf MPH, Wiuf C (2009), pp. 17-49, Imperial Press London  [abs].

Articles

  1. Ratmann O, Andrieu C, Wiuf C and Richardson S, Notes to Robert et al.: Model criticism informs model choice and model comparison, arXiv (December, 2009) (0912.3182.) [3182]  [abs].
  2. Ratmann O, Andrieu C, Wiuf C and Richardson S, Likelihood-free model criticism applied to stochastic models of protein network evolution, in Proceedings of the Sixth International Workshop on Computational Systems Biology, edited by Manninen T, Wiuf C, Laehdesmaeki CH, Grzegorczyk M, Rahnenfuhrer J, Ahdesmaki M, Linne MJ, Yli-Harja O, vol. 48 (2009), pp. 143-146 [pdf]  [abs].
  3. Wiuf C, Ratmann O and Knudsen M, Analysis of biological network data using likelihood-free inference techniques, in TICSP Series, edited by Ahdesmaki M, Strimmer K, Radde N, Rahnenfuehrer J, Klemm K, Laehdesmaeki CH, Yli-Harja O, vol. 41 (2008), pp. 185-188 [pdf]  [abs].
  4. Wiuf C and Ratmann O, Statistical analysis of biological network data., in Symposium i Anvendt Statistik, edited by P Linde (2007), pp. 147-156 [pdf] .