Publications of Dorothy Buck    :chronological  alphabetical  combined  bibtex listing:

Papers Published

1. Baker, KL; Buck, D; Moore, AH; O’donnol, D; Taylor, S, PRIMALITY OF THETA-CURVES WITH PROPER RATIONAL TANGLE UNKNOTTING NUMBER ONE, Transactions of the American Mathematical Society Series B, vol. 12 (January, 2025), pp. 276-297 [doi]  [abs]
2. Buck, D, Knotting and Linking of Macromolecules, in Princeton Companion to Applied Mathematics (January, 2025), pp. 752-755
3. Tubiana, L; Alexander, GP; Barbensi, A; Buck, D; Cartwright, JHE; Chwastyk, M; Cieplak, M; Coluzza, I; Čopar, S; Craik, DJ; Di Stefano, M; Everaers, R; Faísca, PFN; Ferrari, F; Giacometti, A; Goundaroulis, D; Haglund, E; Hou, YM; Ilieva, N; Jackson, SE; Japaridze, A; Kaplan, N; Klotz, AR; Li, H; Likos, CN; Locatelli, E; López-León, T; Machon, T; Micheletti, C; Michieletto, D; Niemi, A; Niemyska, W; Niewieczerzal, S; Nitti, F; Orlandini, E; Pasquali, S; Perlinska, AP; Podgornik, R; Potestio, R; Pugno, NM; Ravnik, M; Ricca, R; Rohwer, CM; Rosa, A; Smrek, J; Souslov, A; Stasiak, A; Steer, D; Sułkowska, J; Sułkowski, P; Sumners, DWL; Svaneborg, C; Szymczak, P; Tarenzi, T; Travasso, R; Virnau, P; Vlassopoulos, D; Ziherl, P; Žumer, S, Topology in soft and biological matter, Physics Reports, vol. 1075 (July, 2024), pp. 1-137 [doi]  [abs]
4. Barbensi, A; Buck, D; Harrington, HA; Lackenby, M, Double branched covers of knotoids, Communications in Analysis and Geometry, vol. 30 no. 5 (January, 2022), pp. 1007-1057 [doi]  [abs]
5. Bousios, A; Nützmann, HW; Buck, D; Michieletto, D, Integrating transposable elements in the 3D genome, Mobile DNA, vol. 11 no. 1 (February, 2020) [doi]  [abs]
6. Barbensi, A; Celoria, D; Harrington, HA; Stasiak, A; Buck, D, Grid diagrams as tools to investigate knot spaces and topoisomerase-mediated simplification of DNA topology., Science advances, vol. 6 no. 9 (February, 2020), pp. eaay1458 [doi]  [abs]
7. Buck, D; O’donnol, D, Knotting of replication intermediates is narrowly restricted, Contemporary Mathematics, vol. 746 (January, 2020), pp. 85-100 [doi]  [abs]
8. O'Donnol, D; Stasiak, A; Buck, D, Two convergent pathways of DNA knotting in replicating DNA molecules as revealed by θ-curve analysis., Nucleic acids research, vol. 46 no. 17 (September, 2018), pp. 9181-9188 [doi]  [abs]
9. Barthel, S; Buck, D, Erratum to: Toroidal embeddings of abstractly planar graphs are knotted or linked (Journal of Mathematical Chemistry, (2015), 53, 8, (1772-1790), 10.1007/s10910-015-0519-1), Journal of Mathematical Chemistry, vol. 55 no. 9 (October, 2017), pp. 1887 [doi]  [abs]
10. Buck, D; Ishihara, K; Rathbun, M; Shimokawa, K, Band surgeries and crossing changes between fibered links, Journal of the London Mathematical Society, vol. 94 no. 2 (October, 2016), pp. 557-582 [doi]  [abs]
11. Baker, KL; Buck, D; Lecuona, AG, Some knots in S1 × S2 with lens space surgeries, Communications in Analysis and Geometry, vol. 24 no. 3 (January, 2016), pp. 431-470 [doi]  [abs]
12. Anderson, G; Buck, D; Coates, T; Corti, A, Drawing in mathematics from inverse vision to the liberation of form, Leonardo, vol. 48 no. 5 (October, 2015), pp. 439-448 [doi]  [abs]
13. Barthel, S; Buck, D, Toroidal embeddings of abstractly planar graphs are knotted or linked, Journal of Mathematical Chemistry, vol. 53 no. 8 (September, 2015), pp. 1772-1790 [doi]  [abs]
14. Buck, D; Dolzhenko, E; Jonoska, N; Saito, M; Valencia, K, Genus ranges of 4-regular rigid vertex graphs, Electronic Journal of Combinatorics, vol. 22 no. 3 (September, 2015) [doi]  [abs]
15. Buck, D; Ishihara, K, Coherent band pathways between knots and links, Journal of Knot Theory and Its Ramifications, vol. 24 no. 2 (February, 2015) [doi]  [abs]
16. Buck, D, Reactions mediated by topoisomerases and other enzymes: Modelling localised DNA transformations, in Natural Computing Series, vol. 48 (January, 2014), pp. 347-361 [doi]  [abs]
17. Baker, KL; Buck, D, The classification of rational subtangle replacements between rational tangles, Algebraic and Geometric Topology, vol. 13 no. 3 (April, 2013), pp. 1413-1463 [doi]  [abs]
18. Stasiak, A; Bates, AD; Buck, DE; Harris, SA; Sumners, DW, Topological aspects of DNA function and protein folding., Biochemical Society transactions, vol. 41 no. 2 (April, 2013), pp. 491-493 [doi]  [abs]
19. Buck, D; Gibbons, J; Staron, E, Pretzel knots with unknotting number one, Communications in Analysis and Geometry, vol. 21 no. 2 (January, 2013), pp. 365-408 [doi]  [abs]
20. Olorunniji, FJ; Buck, DE; Colloms, SD; McEwan, AR; Smith, MCM; Stark, WM; Rosser, SJ, Gated rotation mechanism of site-specific recombination by ϕC31 integrase., Proceedings of the National Academy of Sciences of the United States of America, vol. 109 no. 48 (November, 2012), pp. 19661-19666 [doi]  [abs]
21. Functional Phylogenies Group, Phylogenetic inference for function-valued traits: speech sound evolution., Trends in ecology & evolution, vol. 27 no. 3 (March, 2012), pp. 160-166 [doi]  [abs]
22. Valencia, K; Buck, D, Predicting knot and catenane type of products of site-specific recombination on twist knot substrates., Journal of molecular biology, vol. 411 no. 2 (August, 2011), pp. 350-367 [doi]  [abs]
23. Buck, D; Mauricio, M, Connect sum of lens spaces surgeries: Application to Hin recombination, Mathematical Proceedings of the Cambridge Philosophical Society, vol. 150 no. 3 (May, 2011), pp. 505-525 [doi]  [abs]
24. Buck, D; Valencia, K, Characterization of knots and links arising from site-specific recombination on twist knots, Journal of Physics A Mathematical and Theoretical, vol. 44 no. 4 (January, 2011) [doi]  [abs]
25. Buck, D; Lee Baker, K, Taxonomy of DNA conformations within complex nucleoprotein assemblies, Progress of Theoretical Physics Supplement no. 191 (January, 2011), pp. 55-65 [doi]  [abs]
26. Buck, D; Flapan, E, Predicting knot or catenane type of site-specific recombination products., Journal of molecular biology, vol. 374 no. 5 (December, 2007), pp. 1186-1199 [doi]  [abs]
27. Buck, D; Flapan, E, A topological characterization of knots and links arising from site-specific recombination, Journal of Physics A Mathematical and Theoretical, vol. 40 no. 41 (October, 2007), pp. 12377-12395 [doi]  [abs]
28. Buck, D; Marcotte, CV, Classification of tangle solutions for integrases, a protein family that changes DNA topology, Journal of Knot Theory and Its Ramifications, vol. 16 no. 8 (October, 2007), pp. 969-995 [doi]  [abs]
29. Buck, D; Marcotte, CV, Tangle solutions for a family of DNA-rearranging proteins, Mathematical Proceedings of the Cambridge Philosophical Society, vol. 139 no. 1 (July, 2005), pp. 59-80 [doi]  [abs]
30. Grainge, I; Buck, D; Jayaram, M, Geometry of site alignment during int family recombination: antiparallel synapsis by the Flp recombinase., Journal of molecular biology, vol. 298 no. 5 (May, 2000), pp. 749-764 [doi]  [abs]