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Publications of Amanda Randles    :chronological  alphabetical  combined  bibtex listing:

Papers Published

  1. Randles, A; Frakes, DH; Leopold, JA, Computational Fluid Dynamics and Additive Manufacturing to Diagnose and Treat Cardiovascular Disease., Trends in Biotechnology, vol. 35 no. 11 (November, 2017), pp. 1049-1061 [doi]  [abs]
  2. Gounley, J; Vardhan, M; Randles, A, A computational framework to assess the influence of changes in vascular geometry on blood flow, PASC 2017 - Proceedings of the Platform for Advanced Scientific Computing Conference (June, 2017), ISBN 9781450350624 [doi]  [abs]
  3. Dabagh, M; Jalali, P; Butler, PJ; Randles, A; Tarbell, JM, Mechanotransmission in endothelial cells subjected to oscillatory and multi-directional shear flow., Journal of the Royal Society Interface, vol. 14 no. 130 (May, 2017) [doi]  [abs]
  4. Gounley, J; Draeger, EW; Randles, A, Numerical simulation of a compound capsule in a constricted microchannel., Procedia Computer Science, vol. 108 (January, 2017), pp. 175-184 [doi]  [abs]
  5. Laurence, TA; Ly, S; Fong, E; Shusteff, M; Randles, A; Gounley, J; Draeger, E, Using stroboscopic flow imaging to validate large-scale computational fluid dynamics simulations, Proceedings of SPIE, vol. 10076 (January, 2017), ISBN 9781510605930 [doi]  [abs]
  6. Gounley, J; Chaudhury, R; Vardhan, M; Driscoll, M; Pathangey, G; Winarta, K; Ryan, J; Frakes, D; Randles, A, Does the degree of coarctation of the aorta influence wall shear stress focal heterogeneity?, Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings, vol. 2016 (August, 2016), pp. 3429-3432, ISBN 9781457702204 [doi]  [abs]
  7. Randles, A; Draeger, EW; Oppelstrup, T; Krauss, L; Gunnels, JA, Massively parallel models of the human circulatory system, International Conference for High Performance Computing, Networking, Storage and Analysis, SC, vol. 15-20-November-2015 (November, 2015), ACM, ISSN 2167-4329, ISBN 9781450337236 [citation.cfm], [doi]  [abs]
  8. Randles, A; Draeger, EW; Bailey, PE, Massively parallel simulations of hemodynamics in the primary large arteries of the human vasculature, Journal of Computational Science, vol. 9 (July, 2015), pp. 70-75, ISSN 1877-7503 [doi]
  9. Whitley, HD; Scullard, CR; Benedict, LX; Castor, JI; Randles, A; Glosli, JN; Richards, DF; Desjarlais, MP; Graziani, FR, Lenard-Balescu Calculations and Classical Molecular Dynamics Simulations of Electrical and Thermal Conductivities of Hydrogen Plasmas, Contributions to Plasma Physics, vol. 55 no. 2-3 (February, 2015), pp. 192-202, ISSN 0863-1042 [doi]
  10. You, Y; Fu, H; Song, SL; Randles, A; Kerbyson, D; Marquez, A; Yang, G; Hoisie, A, Scaling Support Vector Machines on modern HPC platforms, Journal of Parallel and Distributed Computing, vol. 76 (February, 2015), pp. 16-31, ISSN 0743-7315 [doi]
  11. Kale, V; Randles, A; Gropp, WD, Locality-optimized mixed static/dynamic scheduling for improving load balancing on SMPs, ACM International Conference Proceeding Series, vol. 09-12-September-2014 (September, 2014), pp. 115-116, ISBN 9781450328753 [doi]  [abs]
  12. Randles, A; Kaxiras, E, Parallel in time approximation of the lattice Boltzmann method for laminar flows, Journal of Computational Physics, vol. 270 (August, 2014), pp. 577-586, ISSN 0021-9991 [doi]
  13. Almendro, V; Cheng, Y-K; Randles, A; Itzkovitz, S; Marusyk, A; Ametller, E; Gonzalez-Farre, X; Muñoz, M; Russnes, HG; Helland, A; Rye, IH; Borresen-Dale, A-L; Maruyama, R; van Oudenaarden, A; Dowsett, M; Jones, RL; Reis-Filho, J; Gascon, P; Gönen, M; Michor, F; Polyak, K, Inference of tumor evolution during chemotherapy by computational modeling and in situ analysis of genetic and phenotypic cellular diversity., Cell Reports, vol. 6 no. 3 (February, 2014), pp. 514-527, ISSN 2211-1247 [doi]  [abs]
  14. Randles, A; Draeger, E; Michor, F, Analysis of pressure gradient across aortic stenosis with massively parallel computational simulations, Computing in cardiology, vol. 41 no. January (January, 2014), pp. 217-220, ISSN 2325-8861  [abs]
  15. You, Y; Song, SL; Fu, H; Marquez, A; Dehnavi, MM; Barker, K; Cameron, KW; Randles, AP; Yang, G, MIC-SVM: Designing a highly efficient support vector machine for advanced modern multi-core and many-core architectures, Proceedings of the International Parallel and Distributed Processing Symposium, IPDPS (January, 2014), pp. 809-818, ISSN 1530-2075, ISBN 9780769552071 [doi]  [abs]
  16. You, Y; Fu, H; Song, SL; Randles, A; Kerbyson, D; Marquez, A; Yang, G; Hoisie, A, Scaling Support Vector Machines on modern HPC platforms, Journal of Parallel and Distributed Computing (2014), ISSN 0743-7315 [doi]  [abs]
  17. Randles, AP; Kale, V; Hammond, J; Gropp, W; Kaxiras, E, Performance analysis of the lattice Boltzmann model beyond Navier-Stokes, Proceedings - IEEE 27th International Parallel and Distributed Processing Symposium, IPDPS 2013 (October, 2013), pp. 1063-1074 [doi]  [abs]
  18. Randles, AP; Rand, DG; Lee, C; Morrisett, G; Sircar, J; Nowak, MA; Pfister, H, Massively parallel model of extended memory use in evolutionary game dynamics, Proceedings - IEEE 27th International Parallel and Distributed Processing Symposium, IPDPS 2013 (October, 2013), pp. 1217-1228 [doi]  [abs]
  19. Keyes, DE; McInnes, LC; Woodward, C; Gropp, W; Myra, E; Pernice, M; Bell, J; Brown, J; Clo, A; Connors, J; Constantinescu, E; Estep, D; Evans, K; Farhat, C; Hakim, A; Hammond, G; Hansen, G; Hill, J; Isaac, T; Jiao, X; Jordan, K; Kaushik, D; Kaxiras, E; Koniges, A; Lee, K; Lott, A; Lu, Q; Magerlein, J; Maxwell, R; McCourt, M; Mehl, M; Pawlowski, R; Randles, AP; Reynolds, D; Rivière, B; Rüde, U; Scheibe, T; Shadid, J; Sheehan, B; Shephard, M; Siegel, A; Smith, B; Tang, X; Wilson, C; Wohlmuth, B, Multiphysics simulations, International Journal of High Performance Computing Applications, vol. 27 no. 1 (February, 2013), pp. 4-83, ISSN 1094-3420 [doi]
  20. Randles, A; Baecher, M; Pfister, H; Kaxiras, E, A Lattice Boltzmann Simulation of Hemodynamics in a Patient-Specific Aortic Coarctation Model, edited by Camara, O; Manso, T; Pop, M; Rhode, K; Sermesant, M; Young, A, Statistical Atlases and Computational Models of the Heart. Imaging and Modelling Challenges: Third International Workshop, STACOM 2012, Held in Conjunction with MICCAI 2012, Nice, France, October 5, 2012, Revised Selected Papers (2013), pp. 17-25, Springer Berlin Heidelberg [978-3-642-36961-2_3], [doi]
  21. Randles, AP, Massively parallel model of evolutionary game dynamics, Proceedings - 2012 SC Companion: High Performance Computing, Networking Storage and Analysis, SCC 2012 (December, 2012), pp. 1531 [doi]  [abs]
  22. Randles, A; Baecher, M; Pfister, H; Kaxiras, EK, A Lattice Boltzmann Simulation of Hemodynamics in a Patient-Speci c Aortic Coarctation Model, edited by Camara, O; Pop, M; Mansi, T; Sermesant, M; Young, A, Statistical Atlases and Computational Models of the Heart: Imaging and Modelling Challenges:, vol. 7746 (October, 2012), pp. 17-25 [doi]  [abs]
  23. Borkin, MA; Gajos, KZ; Peters, A; Mitsouras, D; Melchionna, S; Rybicki, FJ; Feldman, CL; Pfister, H, Evaluation of artery visualizations for heart disease diagnosis., IEEE Transactions on Visualization and Computer Graphics, vol. 17 no. 12 (December, 2011), pp. 2479-2488, ISSN 1077-2626 [doi]  [abs]
  24. Randles, A; Zeger, L, Efficient Resource Allocation for Broadcasting Multi-Slot Messages With Random Access with Capture (October, 2011), IEEE [available here]
  25. Robson, B; Li, J; Dettinger, R; Peters, A; Boyer, SK, Drug discovery using very large numbers of patents. General strategy with extensive use of match and edit operations, Journal of Computer-Aided Molecular Design, vol. 25 no. 5 (May, 2011), pp. 427-441, ISSN 0920-654X [doi]
  26. Randles, A; Melchionna, S; Kaxiras, E; Latt, J; Sircar, J; Bernaschi, M; Bisson, M; Succi, S, Multiscale simulation of cardiovascular flows on the IBM Bluegene/P: full heart-circulation system at red-blood cell resolution (November, 2010), ACM IEEE
  27. Jiang, K; Thorsen, O; Peters, A; Smith, B; Sosa, CP, An Efficient Parallel Implementation of the Hidden Markov Methods for Genomic Sequence-Search on a Massively Parallel System, IEEE Transactions on Parallel and Distributed Systems, vol. 19 no. 1 (January, 2008), pp. 15-23, ISSN 1045-9219 [doi]
  28. Pang, Y-P; Mullins, TJ; Swartz, BA; McAllister, JS; Smith, BE; Archer, CJ; Musselman, RG; Peters, AE; Wallenfelt, BP; Pinnow, KW, EUDOC on the IBM Blue Gene/L system: Accelerating the transfer of drug discoveries from laboratory to patient, IBM Journal of Research and Development, vol. 52 no. 1.2 (January, 2008), pp. 69-81, ISSN 0018-8646 [doi]
  29. Randles, A, Parallel Genomic Sequence-Search on a Massively Parallel System, edited by Thorsen, O; Jiang, K; Smith, B; Lin, H; Feng, W; Sosa, CP (May, 2007), ACM

 

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