Math @ Duke

Papers Published
 Gounley, J; Draeger, EW; Oppelstrup, T; Krauss, WD; Gunnels, JA; Chaudhury, R; Nair, P; Frakes, D; Leopold, JA; Randles, A, Computing the anklebrachial index with parallel computational fluid dynamics.,
Journal of Biomechanics
(October, 2018) [doi] [abs]
 Hegele, LA; Scagliarini, A; Sbragaglia, M; Mattila, KK; Philippi, PC; Puleri, DF; Gounley, J; Randles, A, HighReynoldsnumber turbulent cavity flow using the lattice Boltzmann method,
Physical Review. E, vol. 98 no. 4
(October, 2018) [doi] [abs]
 Herschlag, G; Lee, S; Vetter, JS; Randles, A, GPU data access on complex geometries for D3Q19 lattice boltzmann method,
Proceedings 2018 Ieee 32nd International Parallel and Distributed Processing Symposium, Ipdps 2018
(August, 2018),
pp. 825834, ISBN 9781538643686 [doi] [abs]
 Rafat, M; Stone, HA; Auguste, DT; Dabagh, M; Randles, A; Heller, M; Rabinov, JD, Impact of diversity of morphological characteristics and Reynolds number on local hemodynamics in basilar aneurysms,
Aiche Journal, vol. 64 no. 7
(July, 2018),
pp. 27922802 [doi] [abs]
 Gounley, J; Vardhan, M; Randles, A, A framework for comparing vascular hemodynamics at different points in time,
Computer Physics Communications
(June, 2018) [doi]
 Randles, A; Frakes, DH; Leopold, JA, Computational Fluid Dynamics and Additive Manufacturing to Diagnose and Treat Cardiovascular Disease.,
Trends in Biotechnology, vol. 35 no. 11
(November, 2017),
pp. 10491061 [doi] [abs]
 Gounley, J; Vardhan, M; Randles, A, A computational framework to assess the influence of changes in vascular geometry on blood flow,
PASC 2017  Proceedings of the Platform for Advanced Scientific Computing Conference
(June, 2017), ISBN 9781450350624 [doi] [abs]
 Dabagh, M; Jalali, P; Butler, PJ; Randles, A; Tarbell, JM, Mechanotransmission in endothelial cells subjected to oscillatory and multidirectional shear flow.,
Journal of the Royal Society, Interface, vol. 14 no. 130
(May, 2017) [doi] [abs]
 Gounley, J; Draeger, EW; Randles, A, Numerical simulation of a compound capsule in a constricted microchannel.,
Procedia Computer Science, vol. 108
(January, 2017),
pp. 175184 [doi] [abs]
 Laurence, TA; Ly, S; Fong, E; Shusteff, M; Randles, A; Gounley, J; Draeger, E, Using stroboscopic flow imaging to validate largescale computational fluid dynamics simulations,
Progress in Biomedical Optics and Imaging Proceedings of Spie, vol. 10076
(January, 2017), ISBN 9781510605930 [doi] [abs]
 Gounley, J; Chaudhury, R; Vardhan, M; Driscoll, M; Pathangey, G; Winarta, K; Ryan, J; Frakes, D; Randles, A, Does the degree of coarctation of the aorta influence wall shear stress focal heterogeneity?,
Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference, vol. 2016
(August, 2016),
pp. 34293432, ISBN 9781457702204 [doi] [abs]
 Randles, A; Draeger, EW; Oppelstrup, T; Krauss, L; Gunnels, JA, Massively parallel models of the human circulatory system,
International Conference for High Performance Computing, Networking, Storage and Analysis, SC, vol. 1520November2015
(November, 2015), ACM, ISSN 21674329, ISBN 9781450337236 [citation.cfm], [doi] [abs]
 Randles, A; Draeger, EW; Bailey, PE, Massively parallel simulations of hemodynamics in the primary large arteries of the human vasculature,
Journal of Computational Science, vol. 9
(July, 2015),
pp. 7075, ISSN 18777503 [doi]
 Whitley, HD; Scullard, CR; Benedict, LX; Castor, JI; Randles, A; Glosli, JN; Richards, DF; Desjarlais, MP; Graziani, FR, LenardBalescu Calculations and Classical Molecular Dynamics Simulations of Electrical and Thermal Conductivities of Hydrogen Plasmas,
Contributions to Plasma Physics, vol. 55 no. 23
(February, 2015),
pp. 192202, ISSN 08631042 [doi]
 You, Y; Fu, H; Song, SL; Randles, A; Kerbyson, D; Marquez, A; Yang, G; Hoisie, A, Scaling Support Vector Machines on modern HPC platforms,
Journal of Parallel and Distributed Computing, vol. 76
(February, 2015),
pp. 1631, ISSN 07437315 [doi]
 Kale, V; Randles, A; Gropp, WD, Localityoptimized mixed static/dynamic scheduling for improving load balancing on SMPs,
Acm International Conference Proceeding Series, vol. 0912September2014
(September, 2014),
pp. 115116, ISBN 9781450328753 [doi] [abs]
 Randles, A; Kaxiras, E, Parallel in time approximation of the lattice Boltzmann method for laminar flows,
Journal of Computational Physics, vol. 270
(August, 2014),
pp. 577586, ISSN 00219991 [doi]
 Almendro, V; Cheng, YK; Randles, A; Itzkovitz, S; Marusyk, A; Ametller, E; GonzalezFarre, X; Muñoz, M; Russnes, HG; Helland, A; Rye, IH; BorresenDale, AL; Maruyama, R; van Oudenaarden, A; Dowsett, M; Jones, RL; ReisFilho, J; Gascon, P; Gönen, M; Michor, F; Polyak, K, Inference of tumor evolution during chemotherapy by computational modeling and in situ analysis of genetic and phenotypic cellular diversity.,
Cell Reports, vol. 6 no. 3
(February, 2014),
pp. 514527, ISSN 22111247 [doi] [abs]
 Randles, A; Draeger, E; Michor, F, Analysis of pressure gradient across aortic stenosis with massively parallel computational simulations,
Computing in Cardiology, vol. 41 no. January
(January, 2014),
pp. 217220, ISSN 23258861 [abs]
 You, Y; Song, SL; Fu, H; Marquez, A; Dehnavi, MM; Barker, K; Cameron, KW; Randles, AP; Yang, G, MICSVM: Designing a highly efficient support vector machine for advanced modern multicore and manycore architectures,
Proceedings of the International Parallel and Distributed Processing Symposium, IPDPS
(January, 2014),
pp. 809818, ISSN 15302075, ISBN 9780769552071 [doi] [abs]
 You, Y; Fu, H; Song, SL; Randles, A; Kerbyson, D; Marquez, A; Yang, G; Hoisie, A, Scaling Support Vector Machines on modern HPC platforms,
Journal of Parallel and Distributed Computing
(2014), ISSN 07437315 [doi] [abs]
 Randles, AP; Kale, V; Hammond, J; Gropp, W; Kaxiras, E, Performance analysis of the lattice Boltzmann model beyond NavierStokes,
Proceedings  IEEE 27th International Parallel and Distributed Processing Symposium, IPDPS 2013
(October, 2013),
pp. 10631074 [doi] [abs]
 Randles, AP; Rand, DG; Lee, C; Morrisett, G; Sircar, J; Nowak, MA; Pfister, H, Massively parallel model of extended memory use in evolutionary game dynamics,
Proceedings Ieee 27th International Parallel and Distributed Processing Symposium, Ipdps 2013
(October, 2013),
pp. 12171228 [doi] [abs]
 Keyes, DE; McInnes, LC; Woodward, C; Gropp, W; Myra, E; Pernice, M; Bell, J; Brown, J; Clo, A; Connors, J; Constantinescu, E; Estep, D; Evans, K; Farhat, C; Hakim, A; Hammond, G; Hansen, G; Hill, J; Isaac, T; Jiao, X; Jordan, K; Kaushik, D; Kaxiras, E; Koniges, A; Lee, K; Lott, A; Lu, Q; Magerlein, J; Maxwell, R; McCourt, M; Mehl, M; Pawlowski, R; Randles, AP; Reynolds, D; Rivière, B; Rüde, U; Scheibe, T; Shadid, J; Sheehan, B; Shephard, M; Siegel, A; Smith, B; Tang, X; Wilson, C; Wohlmuth, B, Multiphysics simulations,
The International Journal of High Performance Computing Applications, vol. 27 no. 1
(February, 2013),
pp. 483, ISSN 10943420 [doi]
 Randles, A; Baecher, M; Pfister, H; Kaxiras, E, A Lattice Boltzmann Simulation of Hemodynamics in a PatientSpecific Aortic Coarctation Model, edited by Camara, O; Manso, T; Pop, M; Rhode, K; Sermesant, M; Young, A,
Statistical Atlases and Computational Models of the Heart. Imaging and Modelling Challenges: Third International Workshop, STACOM 2012, Held in Conjunction with MICCAI 2012, Nice, France, October 5, 2012, Revised Selected Papers
(2013),
pp. 1725, Springer Berlin Heidelberg [9783642369612_3], [doi]
 Randles, AP, Massively parallel model of evolutionary game dynamics,
Proceedings  2012 SC Companion: High Performance Computing, Networking Storage and Analysis, SCC 2012
(December, 2012),
pp. 1531 [doi] [abs]
 Randles, A; Baecher, M; Pfister, H; Kaxiras, EK, A Lattice Boltzmann Simulation of
Hemodynamics in a PatientSpeci c Aortic Coarctation Model, edited by Camara, O; Pop, M; Mansi, T; Sermesant, M; Young, A,
Statistical Atlases and Computational Models of the Heart: Imaging and Modelling Challenges:, vol. 7746
(October, 2012),
pp. 1725 [doi] [abs]
 Borkin, MA; Gajos, KZ; Peters, A; Mitsouras, D; Melchionna, S; Rybicki, FJ; Feldman, CL; Pfister, H, Evaluation of artery visualizations for heart disease diagnosis.,
Ieee Transactions on Visualization and Computer Graphics, vol. 17 no. 12
(December, 2011),
pp. 24792488, ISSN 10772626 [doi] [abs]
 Randles, A; Zeger, L, Efficient Resource Allocation for Broadcasting MultiSlot Messages With Random Access with Capture
(October, 2011), IEEE [available here]
 Robson, B; Li, J; Dettinger, R; Peters, A; Boyer, SK, Drug discovery using very large numbers of patents. General strategy with extensive use of match and edit operations,
Journal of ComputerAided Molecular Design, vol. 25 no. 5
(May, 2011),
pp. 427441, ISSN 0920654X [doi]
 Randles, A; Melchionna, S; Kaxiras, E; Latt, J; Sircar, J; Bernaschi, M; Bisson, M; Succi, S, Multiscale simulation of cardiovascular flows on the IBM Bluegene/P: full heartcirculation system at redblood cell resolution
(November, 2010), ACM IEEE
 Jiang, K; Thorsen, O; Peters, A; Smith, B; Sosa, CP, An Efficient Parallel Implementation of the Hidden Markov Methods for Genomic SequenceSearch on a Massively Parallel System,
Ieee Transactions on Parallel and Distributed Systems, vol. 19 no. 1
(January, 2008),
pp. 1523, ISSN 10459219 [doi]
 Pang, YP; Mullins, TJ; Swartz, BA; McAllister, JS; Smith, BE; Archer, CJ; Musselman, RG; Peters, AE; Wallenfelt, BP; Pinnow, KW, EUDOC on the IBM Blue Gene/L system: Accelerating the transfer of drug discoveries from laboratory to patient,
Ibm Journal of Research and Development, vol. 52 no. 1.2
(January, 2008),
pp. 6981, ISSN 00188646 [doi]
 Randles, A, Parallel Genomic SequenceSearch on a Massively Parallel System, edited by Thorsen, O; Jiang, K; Smith, B; Lin, H; Feng, W; Sosa, CP
(May, 2007), ACM


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fax: 919.660.2821
 
Mathematics Department
Duke University, Box 90320
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